1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaaatcgctcctagaagcaggcacttctttcatctgcactgcatacgtggcatcagtttaataatttaagaatagcttcgaaccttttgtgtctcatagGGTCTTGCTCTGGTTCCTCTTTGGGATGACCGCCAGGGAACCATAACAGGCATGCTCACTGCATCAGATTTTGTTTTAATCTTGAGAAAG
species | Zea mays |
transcript | GRMZM5G887890_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
acgtggcatcagtttaataatttaagaatagcttcgaaccttttgtgtctcatagGGTCTTGCTCTGGTTCCTCTTTGGGATGACCGCCAGGGAACCATAACAGGCATGCTCACTGCATCAGATTTTGTTTTAATCTTGAGAAAG
gtttaat putative branch site (score: 126)
ccttttgt putative PPT
atcagtttaataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaatcgctcctagaagcaggcacttctttcatctgcactgcatacgtggcatcagtttaataatttaagaatagcttcgaaccttttgtgtctcatagGGTCTTGCTCTGGTTCCTCTTTGGGATGACCGCCAGGGAACCATAACAGGCATGCTCACTGCATCAGATTTTGTTTTAATCTTGAGAAAG
- - - -gctccta
- - - - - - - - -gcaggca
- - - - - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - gcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaatag