1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGCAGTCTACTGCGGTGGCCTCTACACCGCCAAACCAGAGCTTGCTGCCCGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccagaaacaattttttttctcccgttatgttcaattctttactcaggttccaagtccaaaccttaaccaatgatctgtcatcctagtgtggttc...
species | Zea mays |
transcript | GRMZM5G886989_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTTEST: gi|60343078|gb|DN210051.1|DN210051
genomic: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
EST: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTTEST: gi|60350952|gb|DN217925.1|DN217925
genomic: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
EST: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTTEST: gi|60355961|gb|DN222934.1|DN222934
genomic: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
EST: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTTEST: gi|78075052|gb|DV503486.1|DV503486
genomic: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
EST: CGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTTEST: gi|211101165|gb|FL105401.1|FL105401
genomic: CGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
EST: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTTEST: gi|60343072|gb|DN210045.1|DN210045
genomic: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
EST: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAG ATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
genomic: CGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccag ... tcatattcagATATACCATGGAGCGCCCTCGATTTAGTGATCATCTTGAAGCAATCAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCAGTCTACTGCGGTGGCCTCTACACCGCCAAACCAGAGCTTGCTGCCCGCCGCATCGAGGCCATCGGCTTCCAAGTCGGGCACCAGCTCTCTGAGAGgtacaaccagaaacaattttttttctcccgttatgttcaattctttactcaggttccaagtccaaaccttaaccaatgatctgtcatcctagtgtggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC