ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ACCATGCTTCTGTATTTCCCATGCGGGTTGATAAGAGGTGCCTTGACCAACTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcagctatgctttttctatgaccttttggcacatggttaattttcatcttttgatgatctgtttcatatcttatatcaaccactggagtcaaac...

Basic information

species	Zea mays
transcript	GRMZM5G886989_T02
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G886989_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g06970.3 (Oryza sativa), 5'ss of exon 2

ACCATGCTTCTGTATTTCCCATGCGGGTTGATAAGAGGTGCCTTGACCAACTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcagctatgctttttctatgaccttt---tggcacatggttaattttcatcttttgatgatctgtttcatatcttatatcaaccactggagtcaaac
| |||||||||||| || ||||||||| | |||||||||||||||||||| || || ||||||||||||||| |||| |||||||| ||||||||||||||| ||||   |||  | ||||| |||||||||   | |||      |   |    |      |||  |||  |  ||     | |       |  | | |   
AGCATGCTTCTGTACTTTCCATGCGGGATAATAAGAGGTGCCTTGACCAATTTGGGTATTTCGTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgcactactccttttc-atgacctttactttgcatgcaactccatgaggttgcaaaatgcactggatggtactccttctgttttcatataattat--

upper sequence: GRMZM5G886989_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g19060.1 (Oryza sativa), 5'ss of exon 3

ACCATGCTTCTGTATTTCCCATGCGGGTTGATAAGAGGTGCCTTGACCAACTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcagctatgctttttctatgaccttttggcacatggttaattttcatcttttgatgatctgtttcatatcttatatcaaccactggagtcaaac-----
| |||||||||||| || ||||||||| | |||||||||||||||||||| || || ||||| ||||||||| |||| |||||||| ||||||||||||||| ||||   | |     ||   ||| | |||    ||   |  |           |  || ||    |   ||  |  || || ||  ||   |||||      
AGCATGCTTCTGTACTTTCCATGCGGGATAATAAGAGGTGCCTTGACCAATTTGGGGATTTCTTGTTCTGTCACTGCAGACATGTCCAACCTTCCAGCATgtgagttgcaccac----ttctcatgtcttttacataccatgcaacaccatgaggctgcataatgcactcactagatggta-caccctttgttttcaaataacta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|4646537|gb|AI491684.2|AI491684

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|86470758|gb|DY237128.1|DY237128

EST:     CTTAGGAATTTGGTGTTCTGTCTCTGTTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|78086281|gb|DV514674.1|DV514674

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|116818537|gb|EC861572.1|EC861572

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|37379373|gb|CF626430.1|CF626430

EST:     CTTAGGAATTTCGTGTTCTTTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|60343078|gb|DN210051.1|DN210051

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|60350952|gb|DN217925.1|DN217925

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|32800423|gb|CD952659.1|CD952659

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|88752115|gb|DY536256.1|DY536256

EST:     CTTAGGAATTTCGTGTTCTGTTTCTGTTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|211143815|gb|FL448466.1|FL448466

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|32866946|gb|CF006628.1|CF006628

EST:     TTAGGAATTTCGTGTTCTGTCTCTGCTGACATGATCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: TTAGGAATTTCGTGTTCTGTCTCTGCTGACATG-TCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|32800662|gb|CD952898.1|CD952898

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACGTGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|60342045|gb|DN209018.1|DN209018

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|60355961|gb|DN222934.1|DN222934

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|8665604|gb|BE186420.1|BE186420

EST:     AGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: AGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|78075052|gb|DV503486.1|DV503486

EST:     CTTAGGAATTTCGTGTTCTGTTTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|89248854|gb|DY620640.1|DY620640

EST:     CTTAGGAATTTCGTGTTCTGTTTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|50334363|gb|CO529489.1|CO529489

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|8665307|gb|BE186123.1|BE186123

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|211253351|gb|FL463440.1|FL463440

EST:     CTCAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAAGGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|211101165|gb|FL105401.1|FL105401

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGACCTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|32800833|gb|CD953069.1|CD953069

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|60343072|gb|DN210045.1|DN210045

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

EST: gi|60355163|gb|DN222136.1|DN222136

EST:     CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT                         GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA
genomic: CTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 31

ACCATGCTTCTGTATTTCCCATGCGGGTTGATAAGAGGTGCCTTGACCAACTTAGGAATTTCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttcag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGGAATGATACAAGTACAGTACGAAGATTCGACAGTATCTGCTTGTGGTTCAAGCCGGGTTGAAC

Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 27

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 31