1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCCCTGCCCCTCTCCTCCAGCGCCGCTCGCCAGCTCTCTGCCCCCGCCGCGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgaccttgtctgcccgtccgatggctctcacagtctctctcctccctcgagaaccccccccccccccccccccccccccttccgatttcgatttgaccttgtgttcttcag
species | Zea mays |
transcript | GRMZM5G885700_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGEST: gi|89762364|gb|DY689981.1|DY689981
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGEST: gi|211050924|gb|FL038266.1|FL038266
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGEST: gi|71444956|gb|DR826006.1|DR826006
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGEST: gi|149088134|gb|EE177283.2|EE177283
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGEST: gi|211050923|gb|FL038265.1|FL038265
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGA--SCCCTGCGTGCTGTACAAGTGEST: gi|211484014|gb|FL012872.1|FL012872
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGEST: gi|148935905|gb|EC879955.2|EC879955
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGAGAAGGAGTG GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCCTGCCCCTCTCCTCCAGCGCCGCTCGCCAGCTCTCTGCCCCCGCCGCGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgaccttgtctgcccgtccgatggctctcacagtctctctcctccctcgagaaccccccccccccccccccccccccccttccgatttcgatttgaccttgtgttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG