1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cgtcgcaggctccgtccgcaactgcaccctcctgtcagtgctccgcctccatcccatctccactgccctcccggttcttgatttctttccccttcggtagGGTAGCTTCTCGGAAGTGGCGGCGGCGGATGTGGAGGAGGGGGCACTGGCTGGGGAAAGCTCAGACGACGAGTGGAGCTTCGGGGGCCTGATGAGTACGT
species | Zea mays |
transcript | GRMZM5G883138_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cctccatcccatctccactgccctcccggttcttgatttctttccccttcggtagGGTAGCTTCTCGGAAGTGGCGGCGGCGGATGTGGAGGAGGGGGCACTGGCTGGGGAAAGCTCAGACGACGAGTGGAGCTTCGGGGGCCTGATGAGTACGT
tcttgat putative branch site (score: 4)
ccctcccggttcttga CT-rich tract
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtcgcaggctccgtccgcaactgcaccctcctgtcagtgctccgcctccatcccatctccactgccctcccggttcttgatttctttccccttcggtagGGTAGCTTCTCGGAAGTGGCGGCGGCGGATGTGGAGGAGGGGGCACTGGCTGGGGAAAGCTCAGACGACGAGTGGAGCTTCGGGGGCCTGATGAGTACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - gcaggct
- - - - - - - - -gcaactg
- - - - - - - - - - - - - -cctcctg
- - - - - - - - - - - - - - - - - - -gtgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcttg