1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggcatgtgttccacttcctctctcgtatatacactacatgcgagtctctccaaacacatcagcatccatcatgttttaaccaacgtcaggtcactcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGCCAACAAGGCAGCAGGAGCTGCTCAGCCAGTTGGTGTTCAACAACATGT
species | Zea mays |
transcript | GRMZM5G882527_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|94480072|gb|EB709030.1|EB709030
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|101392951|gb|EB818406.1|EB818406
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|78024412|gb|DV492799.1|DV492799
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|60342009|gb|DN208982.1|DN208982
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|71760000|gb|DR957937.1|DR957937
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|14243392|gb|BG841045.2|BG841045
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|74243762|gb|DT651676.1|DT651676
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGEST: gi|71769016|gb|DR966953.1|DR966953
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
EST: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAG GACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
genomic: CACCTTACTCACTGCATGGCCATGGCCAGGGTTCCATCTCTTTTTCCCAGgttggcatgt ... tcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAG
ccaaacacatcagcatccatcatgttttaaccaacgtcaggtcactcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGCCAACAAGGCAGCAGGAGCTGCTCAGCCAGTTGGTGTTCAACAACATGT
ttttaac putative branch site (score: 2)
tcactcttttcc putative PPT
atgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcatgtgttccacttcctctctcgtatatacactacatgcgagtctctccaaacacatcagcatccatcatgttttaaccaacgtcaggtcactcttttccagGACAATGGCAGCAGCACTTACCTGATGCAGCATCAGCAAGCAGCGGGGGAGCCAACAAGGCAGCAGGAGCTGCTCAGCCAGTTGGTGTTCAACAACATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT