Sequence
atgc intronic sequence ATGC exonic sequence...cttctaccctattatcttcctgtttatcgctggctgatacgcgatgcactgtgcctttaattctgcttaatctggggaaactgacaacgatttgtaccagAGGACACAGATTATCAGCTGATTGTCACGGAAGATGTCGCTAGCCAAGAAAGAAGAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78117971|gb|DV536358.1|DV536358EST: GCCGCACTGAGCGTGGCGAGCTCTGGGCCAGACTCGAGCGATCTTATCAG AGGACACAGATTATCAGCTGATTGTCACGGAAGATGTCGCTAGCCAAGAAA
genomic: GCCGCACTGAGCGTGGCGAGCTCTGGGCCAGACTCGAGCGATCTTATCAGgtagttcatt ... tttgtaccagAGGACACAGATTATCAGCTGATTGTCACGGAAGATGTCGCTAGCCAAGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcactgtgcctttaattctgcttaatctggggaaactgacaacgatttgtaccagAGGACACAGATTATCAGCTGATTGTCACGGAAGATGTCGCTAGCCAAGAAAGAAGAG
aactgac putative branch site (score: 2)
tttaattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttctaccctattatcttcctgtttatcgctggctgatacgcgatgcactgtgcctttaattctgcttaatctggggaaactgacaacgatttgtaccagAGGACACAGATTATCAGCTGATTGTCACGGAAGATGTCGCTAGCCAAGAAAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - -cttcctg
- - - - - - - - - - - - - - - -ggctgat
- - - - - - - - - - - - - - - - - - - - - gatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgccttt