1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gcaagcttatcctcctctctagttcgttctcatcgcttgctatttccagcgatcagaaaaatgtcctgtggtgtttccatgatgcagGCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGTCAAGCTTCTAACAAGTACCTTAACTACGGAGCTGGTATAAGCGAG
species | Zea mays |
transcript | GRMZM5G872934_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTGCAGCAGCGATCAGAGAATGTCTCGTGGGATACCTTGGTTTCGCAG GCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGTEST: gi|211195278|gb|FK976847.1|FK976847
genomic: GGCTGCAGCAGCGATCAGAGAATGTCTCGTGGGATACCTTGGTTTCGCAGgcaagcttat ... catgatgcagGCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGT
EST: GGCTGCAGCAGCGATCAGAGAATGTCTCGTGGGATACCTTGGTTTCGCAG GCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGTEST: gi|94477579|gb|EB706537.1|EB706537
genomic: GGCTGCAGCAGCGATCAGAGAATGTCTCGTGGGATACCTTGGTTTCGCAGgcaagcttat ... catgatgcagGCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGT
EST: GGCTGCAGCAGCGATCAGAGAATGTCTCGTGGGATACCTTGGTTTCGCAG GCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGT
genomic: GGCTGCAGCAGCGATCAGAGAATGTCTCGTGGGATACCTTGGTTTCGCAGgcaagcttat ... catgatgcagGCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGT
tcgcttgctatttccagcgatcagaaaaatgtcctgtggtgtttccatgatgcagGCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGTCAAGCTTCTAACAAGTACCTTAACTACGGAGCTGGTATAAGCGAG
tgtttcc CT-rich tract
agaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcttatcctcctctctagttcgttctcatcgcttgctatttccagcgatcagaaaaatgtcctgtggtgtttccatgatgcagGCCTATGAAGACGATGTCGATTTGTCCGCGAGTGCGTACTGGGTACCTGGTCAAGCTTCTAACAAGTACCTTAACTACGGAGCTGGTATAAGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT