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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGAGGGTTCTTGACCCCAAGAAAGCACAGAATATCGCCATCCTGCTCCGTGCATTGAATGTTACACGCGATGAGGTCTCTGATGCACTGTTGGATGgtgagtgtcactacactgctccttgggtctttgcagcgctgattttttgtttggataaattcagtggctaatgtttcttgctgaaggtactttggctgtt...

Basic information

species Zea mays
transcript GRMZM5G872264_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872264_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g10680.1 (Oryza sativa), 5'ss of exon 2
GAGGAGAGGGTTCTTGACCCCAAGAAAGCACAGAATATCGCCATCCTGCTCCGTGCATTGAATGTTACACGCGATGAGGTCTCTGATGCACTGTTGGATGgtgagtg-tcactaca--ctgctccttgggtctttgcagcgctgattt--tttgtttggataaattcagtggctaatgtttcttgctgaaggtactttggctgtt
||||||||||| || ||||||||||| || ||||| |||||||||||||| || || |||||||| || || || |||||||| ||||||||||||||||||||||  | | | ||   | || |||  | | |||||  | | |||     |     |||| | |||     | || ||| ||| | |  ||| |   |||   
GAGGAGAGGGTGCTCGACCCCAAGAAGGCGCAGAACATCGCCATCCTGCTGCGCGCGTTGAATGTCACGCGTGAGGAGGTCTCGGATGCACTGTTGGATGgtgagtacttagttcagtttactgcttttgacattgcattgttaattcagcgtaccacgatagaatcatcatttcatttttgttggtaatagtagtc--gct---