1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccataaaactagtggttctggttgtttatcttctatttagatatttgtacatccaatacgtacattgaacatgttctcatttcaggtttcgttgtttcagAAAGTTGTGTGCTATTCATTGATTGCCATGTCAACACGTAGGGAGGTTGTCTTGTATCACCCATTGCCTGCACCAGGAGTGACAAACAACCTCAAGGATG
species | Zea mays |
transcript | GRMZM5G872216_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCGTTTCGTTGTTTCEST: gi|71771623|gb|DR969560.1|DR969560
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCA------CG---C---G-TTCgtaagtaacc ..
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCGTTTCGTTGTTTCEST: gi|71771623|gb|DR969560.1|DR969560
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCA------CG---C---G-TTCgtaagtaacc ..
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCGTTTCGTTGTTTCEST: gi|71449734|gb|DR830784.1|DR830784
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCA------CG---C---G-TTCgtaagtaacc ..
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCGTTTCGTTGTTTCEST: gi|71449734|gb|DR830784.1|DR830784
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCA------CG---C---G-TTCgtaagtaacc ..
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCGTTTCGTTGTTTCEST: gi|71449734|gb|DR830784.1|DR830784
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCA------CG---C---G-TTCgtaagtaacc ..
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCGTTTCGTTGTTTCEST: gi|211471838|gb|FL184454.1|FL184454
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCA------CG---C---G-TTCgtaagtaacc ..
EST: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTC AAAGTTGTGTGCTATTCATTGATTGCCATGTCAACACGTAGGGAGGTTGTC
genomic: GAGTTGCCCGGGCTCGGGTTGACTCGTGTGGGCGCCTCTTTCACGCGTTCgtaagtaacc ... gttgtttcagAAAGTTGTGTGCTATTCATTGATTGCCATGTCAACACGTAGGGAGGTTGTC
tgtacatccaatacgtacattgaacatgttctcatttcaggtttcgttgtttcagAAAGTTGTGTGCTATTCATTGATTGCCATGTCAACACGTAGGGAGGTTGTCTTGTATCACCCATTGCCTGCACCAGGAGTGACAAACAACCTCAAGGATG
tttcgtt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataaaactagtggttctggttgtttatcttctatttagatatttgtacatccaatacgtacattgaacatgttctcatttcaggtttcgttgtttcagAAAGTTGTGTGCTATTCATTGATTGCCATGTCAACACGTAGGGAGGTTGTCTTGTATCACCCATTGCCTGCACCAGGAGTGACAAACAACCTCAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
ccataaaa
- - - - - - -ggttctg
- - - - - - - - - - gttgttt
- - - - - - - - - - - - - - - - - - - - - - - - -catccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacatg