1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgtggtattgctgagtctgtattttaataatcgttgtgcatagaattcgttgggtttttataagttactaacaccgcctacttcaactctcttctgcagGAGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATATGTTTTGAATTTCGGGGCTGGTCATCAATTCATTCCTTCAACATGTTGCAGAAGCAG
species | Zea mays |
transcript | GRMZM5G871936_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGAAGCTTACGAACCTGGATGGACGGCCTCCCAACAAGAAATGGAG GAGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATATGTTTTGAEST: gi|113840047|gb|DW964632.1|DW964632
genomic: TTTTGGAAGCTTACGAACCTGGATGGACGGCCTCCCAACAAGAAATGGAGttaagttcta ... tcttctgcagGAGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATATGTTTTGA
EST: TTTTGGAAGCTTACGAACCTGGATGGACGGCCTCCCAACAAGAAATGGAG -AGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATA
genomic: TTTTGGAAGCTTACGAACCTGGATGGACGGCCTCCCAACAAGAAATGGAGttaagttcta ... tcttctgcagGAGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATA
attcgttgggtttttataagttactaacaccgcctacttcaactctcttctgcagGAGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATATGTTTTGAATTTCGGGGCTGGTCATCAATTCATTCCTTCAACATGTTGCAGAAGCAG
tactaac putative branch site (score: 0)
cttcaactctcttct putative PPT
tttttataagttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtggtattgctgagtctgtattttaataatcgttgtgcatagaattcgttgggtttttataagttactaacaccgcctacttcaactctcttctgcagGAGCCAGCCTCAGTAAATTTTGATGTATTACCAACCTTGGATATGTTTTGAATTTCGGGGCTGGTCATCAATTCATTCCTTCAACATGTTGCAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC