1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...catcaagttcctaactttcagcaatgtcaaaccttttcagttttgtgatggtgtgtgtttacctaagtaggctgatcccatctccattttgtcgcttcagGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGCCAGCCGTGCAT
species | Zea mays |
transcript | GRMZM5G871262_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCGTCGCGTCCGCGGTAGTGTGCGGCCTCGTCCTCGGCATCCTATACG GACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCCEST: gi|211082082|gb|FL165096.1|FL165096
genomic: GGTCGTCGCGTCCGCGGTAGTGTGCGGCCTCGTCCTCGGCATCCTATACGgtgcgcgcgc ... gtcgcttcagGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCC
EST: GGTCGTCGCGTCCGCGGTAGTGTGCGGCCTCGTCCTCGGCATCCTATACG GACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCC
genomic: GGTCGTCGCGTCCGCGGTAGTGTGCGGCCTCGTCCTCGGCATCCTATACGgtgcgcgcgc ... gtcgcttcagGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCC
tgatggtgtgtgtttacctaagtaggctgatcccatctccattttgtcgcttcagGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGCCAGCCGTGCAT
ggctgat putative branch site (score: 246)
ttttgtc putative PPT
attttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcaagttcctaactttcagcaatgtcaaaccttttcagttttgtgatggtgtgtgtttacctaagtaggctgatcccatctccattttgtcgcttcagGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGCCAGCCGTGCAT
- - - - - - - - ttcagca
- - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt