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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtttcagaaccttcagtatggtcctcaacatttgctgcacctttatttagaacattaacttgcatgcctattatatatttaatactgtttttaatcattttgttgccctcatatttgattgcatatagcttgatttatcatgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTGGGGTACATCTCTGTCAGTAGTCGCTCCAGTTGT

Basic information

species Zea mays
transcript GRMZM5G868981_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107106_T06 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g41010.7 (Oryza sativa), 3'ss of exon 9
gtctgtgtttcagaaccttcagtatggtcctcaacatttgctgcacctttatttagaaca--ttaacttgcat-gcctattatatattt---aatactgtttttaatcattttgttgccctcatatttgattgcatatagcttgatttatcatgt---------tacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGT--GGGGTACATCTCTGTCAGTAGTCGCTCCAGTTGT
||   |  || ||||||| ||||||| || |||  || |||    ||||| |||||||||  | ||  |  || || |||  ||| |||   |  |    |||   | ||||  ||| | ||||  |   |||   || ||||||| ||||||||         ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||| |||||||||||||| | ||   
gtgcataatt-agaacctccagtatgatcatcattatatgccatgcctttctttagaacaattcaatataaattgcatatcttatgttttctatcaacagtttcgtttatttgcttgtcttcatcatctcttgtgcatggcttgatatatcatgtccttactgttacagTGAGTCCTAGAACAGTTATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTCTGGGGTCTATCTGTGTCAGTAGTCGCTGCTGTA--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattttgttgccctcatatttgattgcatatagcttgatttatcatgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGGTTCAGTCTGAATGTGGGGTACATCTCTGTCAGTAGTCGCTCCAGTTGT
                 atatttgatt  TA-rich tract