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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATAATGACATTTGCCCATTGACTATTAATAACACATTGCTGCAGTCATGCTACTTGAGAAATACAGAATGGGCTTGTGGTGTAGCAGTTTATACAGgtaacttgttgatactatttgttttgtttcatgtgacag

Basic information

species Zea mays
transcript GRMZM5G865163_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G865163_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 6
ATTGATAATGACATTTGCCCATTGACTATTAATAACACATTGCTGCAGTCATGCTACTTGAGAAATACAGAATGGGCTTGTGGTGTAGCAGTTTATACAGgtaacttgttgatactatttgttttgtttcatgtgacag---------------------------------------------------------------
|||||||| |||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||   |     ||| |  |  ||||   ||| |                                                               
ATTGATAACGACATTTGTCCATTGACTATTAGTAACACACTGCTACAGTCATGCTACTTGAGAAACACAGAATGGGCTTGTGGTGTGGCAGTTTATACAGgtaccttg--aactagctttctcctaattcacaagactgatgtgtacctctttttccatcaatagtattatatactccaatgaagctgaagttgttgtaaaa

upper sequence: GRMZM5G865163_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 6
-----------------------------------------------------ATTGATAATGACATTTGCCCATTGACTATTAATAACACATTGCTGCAGTCATGCTACTTGAGAAATACAGAATGGGCTTGTGGTGTAGCAGTTTATACAGgtaacttgttgatactatttgttttgtttcatgtgacag
                                                     ||||||||||| || ||||| || || ||||| |||||  | || |||||||| ||||||||||| || |||||||| ||||| || || || |||||||                                       
CAGATAAAGACATCAGGAGATTTGATGCAAACATGCGGCTGTTTCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACCATTCTTCAgtcatgttacttgagaaacactgaatgggcatgtggagtggctgtgtatacag---------------------------------------

upper sequence: GRMZM5G865163_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G44240.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTGATAATGACATTTGCCCATTGACTATTAATAACACATTGCTGCAGTCATGCTACTTGAGAAATACAGAATGGGCTTGTGGTGTAGCAGTTTATACAGgtaacttgttgatactatttgttttgtttcatgtgacag---------------------------------------------------------------------------------------------
||||| |||||  | ||  | || || || || |||||  | || ||||| || ||||||||||||||||| ||||||||||| ||| | || ||||||||||| ||     ||  |  |||||| | |  | |    |                                                                                             
ATTGACAATGATGTCTGTTCTTTAACCATAAAAAACACTCTTCTTCAGTCCTGTTACTTGAGAAATACAGAGTGGGCTTGTGGAGTATCTGTCTATACAGgtaaatttaccttataaaatgttttttcttttcttgtggaccatgtgttctgtgttcttattatctctggtcagtcgtacgattgtagttgatcttaataaatgcttcaacaatttttcatactatctatag

upper sequence: GRMZM5G865163_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S177_30V6.1 (Physcomitrella patens), 5'ss of exon 5
ATTGATAATGACATTTGCCCATTGACTATTAATAACACATTGCTGCAGTCATGCTACTTGAGAAATACAGAATGGGCTTGTGGTGTAGCAGTTTATACAGgtaa----cttgttgatactattt-gttttgtttcatgtgacag--------------------------------------------------------
   |   ||||  | |  || |||  | | || |||||  || | || |  || ||  |  | |||||||||||||||||||| ||||| ||||| || |||||     || | | |   |    | |  |   |  || |  |                                                        
CCCGGCGATGAGCTCTCTCCCTTGGGTGTCAAGAACACTCTGTTACAATGTTGTTATCTTCGGAATACAGAATGGGCTTGTGGAGTAGCTGTTTACACTGgtaagtgttttctgggtgtaagacagctaagcagcgagtaaacgaggtgtctatgattacgacctagtagtttttctccatattttcttgtatttcgggg