1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCACGGCCGCCGGGTCCTCCTTAACGGCGACCACCCGCCGCAGGTCGCGGCCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgccccttccaccttgctgcttcactcgtcactacattgggctccagctccagggactgttggctgttcatagtagggtcaaatcaaatggggc...
species | Zea mays |
transcript | GRMZM5G864166_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|211198361|gb|FL353641.1|FL353641
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|50326457|gb|CO521583.1|CO521583
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|50329289|gb|CO524415.1|CO524415
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|76293255|gb|DV032823.1|DV032823
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|211393593|gb|FL320923.1|FL320923
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|211290993|gb|FL323352.1|FL323352
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTKYGAGEST: gi|71434809|gb|DR815859.1|DR815859
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTG-GAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|91057203|gb|EB167621.1|EB167621
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|94480221|gb|EB709179.1|EB709179
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|74243604|gb|DT651518.1|DT651518
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|78088237|gb|DV516630.1|DV516630
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|50335836|gb|CO530962.1|CO530962
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAGEST: gi|211353992|gb|FL313760.1|FL313760
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
EST: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAG GATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
genomic: CCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgcc ... gtccttgcagGATGCAGCTGATGTCAGGAATCTCTCCCTTGTCTACACTCTTGCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGGCCGCCGGGTCCTCCTTAACGGCGACCACCCGCCGCAGGTCGCGGCCCTCGGGCGCGGCGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTTGAGgtatcatgccccttccaccttgctgcttcactcgtcactacattgggctccagctccagggactgttggctgttcatagtagggtcaaatcaaatggggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaaa