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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattactacatgcatggaaataatttatctagacaacatccctgtagttatcctaacacgttgcttctcag

Basic information

species Zea mays
transcript GRMZM5G863656_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G863656_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ11589 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaatta----ctacatgcatggaaataatttatctagacaacatccctgtagttatcctaacacgttgcttctcag
 || ||    ||  |  | ||||  || || || |||   | ||| |||||||||||||| || | |||||| ||||| ||||| |||||| ||||||||||||| |    | | ||     | || || || | |        |  ||||  ||   | |                
CGAAAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGCAAGGTGAAGATCCTGAAGGCCCCAAAGTTCGATCTTGGGAAGCTGATGGAGgtaatgaagaaccatatttccagcaagaacttgtgtgc------ttactgtcatttctccag---------------

upper sequence: GRMZM5G863656_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattactacatgcatggaaataatttatctagacaacatccctgtagttatcctaacacgttgcttctcag
 |||||    ||  |  | ||||  || || || |||   | ||| || ||||||||||| || | |||||| ||||| ||||| |||||| ||||||||||||| |             ||  || | || ||  |  |    |||  |||   |    | || || |    
CGAGAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGTAAGGTGAAGATTCTGAAGGCCCCAAAGTTCGATCTTGGGAAGCTGATGGAGgtaatga-----------agaaccatctttccagcaagaacttgtgtgcttactgt----catttctccag--

upper sequence: GRMZM5G863656_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ11647 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattactacatgcatggaaataatttatctagacaacatccctgtagttatcctaacacgttgcttctcag---
 |||||    ||  |  | ||||  || || || |||   | ||| || ||||||||||| || | |||||| ||||| ||||| |||||| ||||||||||||| |           ||   |  ||  |     ||| | | |||  |||   |       | | | ||     
CGAGAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGTAAGGTGAAGATTCTGAAGGCCCCAAAGTTCGATCTTGGGAAGCTGATGGAGgtaatga----------agagccatctttccagcgaaaccttcttgtgcttactgtgctcttgtacatttcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13490837|gb|BG517601.1|BG517601
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTAAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|108954196|gb|EC365049.1|EC365049
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|50325967|gb|CO521093.1|CO521093
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|91055169|gb|EB165587.1|EB165587
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32937017|gb|CF041836.1|CF041836
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GCTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32936192|gb|CF041004.1|CF041004
EST:     ACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAAAGGACGTTGGTGTGAAGCTTGAAAGGCCTGTC
genomic: ACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|166700673|gb|EG270818.1|EG270818
EST:     CTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: CTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|166431622|gb|EG098502.1|EG098502
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAG
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAG
EST: gi|33094183|gb|CF054177.1|CF054177
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|166665664|gb|EG084326.1|EG084326
EST:     CCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: CCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32846780|gb|CD986461.1|CD986461
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAAAGGACGTTGGTGTGAAGCTTGAAAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|71313931|gb|DR793570.1|DR793570
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|33093568|gb|CF053562.1|CF053562
EST:     AGGTCAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|33094037|gb|CF054031.1|CF054031
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|33093888|gb|CF053882.1|CF053882
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|33097782|gb|CF057742.1|CF057742
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|166602598|gb|EG119942.1|EG119942
EST:     GGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: GGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32937924|gb|CF042743.1|CF042743
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32912995|gb|CF017807.1|CF017807
EST:     GAAGATACTCAAGGCCCGGAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: GAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32911762|gb|CF016574.1|CF016574
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32859516|gb|CD999197.1|CD999197
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAAAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32941868|gb|CF046687.1|CF046687
EST:     AGGTGAAGATACTCAAGCCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|8367831|gb|BE050776.1|BE050776
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32938878|gb|CF043697.1|CF043697
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|76282090|gb|DV021658.1|DV021658
EST:     GGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: GGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32933918|gb|CF038730.1|CF038730
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACCACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|4621538|gb|AI612371.1|AI612371
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|50339793|gb|CO534919.1|CO534919
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|33092464|gb|CF052458.1|CF052458
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|30052469|gb|AI065758.2|AI065758
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32934921|gb|CF039733.1|CF039733
EST:     AGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAAAGGACGTTGGTGTGAAGCTTTAGAGGCCTGTC
genomic: AGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|166603572|gb|EG076379.1|EG076379
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGC
EST: gi|211075566|gb|FL342728.1|FL342728
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|71445365|gb|DR826415.1|DR826415
EST:     GGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: GGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|33093813|gb|CF053807.1|CF053807
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAAAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|78105374|gb|DV523792.1|DV523792
EST:     GATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: GATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|113832677|gb|DW950443.1|DW950443
EST:     TCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: TCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|166655535|gb|EG314932.1|EG314932
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGC
EST: gi|71595829|gb|DR906580.1|DR906580
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|32944025|gb|CF048844.1|CF048844
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAG                         GTTCATGGCGACTACGAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattacta ... tgcttctcagGTTCATGGCGACTACAAAGAGGACGTTGGTGTGAAGCTTGAGAGGCCTGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCATGGCCCCCAAGTTTGATCTCGGGAAGTTGATGGAGgtaattactacatgcatggaaataatttatctagacaacatccctgtagttatcctaacacgttgcttctcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA