1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgttcaaacaatctattcattttattatcttttttttgataaacatggcattcctggtatgaatatgcagtcacttcattcgttgttattttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTA
species | Zea mays |
transcript | GRMZM5G861959_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
atggcattcctggtatgaatatgcagtcacttcattcgttgttattttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTA
ttatttt CT-rich tract
ttgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcaaacaatctattcattttattatcttttttttgataaacatggcattcctggtatgaatatgcagtcacttcattcgttgttattttggctcagCTAACCATCAGGAGGTCTGGAGGATCACAAGTGCCTTGGAGAACCACAAGTATGAAATTGCTGACTGGGACCTTGGTGTCGGAATATACATAGACTTCTA
- - - aaacaat
- - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - gataaaca
- - - - - - - - - - - - - - - - - - - - - - - - gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgca