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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgcgcccaaccgtgaccaattttgcgccacggctttgattcggccgttcaccggcgtacctcgtcgcgcggcagCACCACCATCTCTGGGAGGTGCCTGGCTGCCGAGGTGTAGTTGGGGGCGATGCGGTGACCCTTGGTTCAGCGATGAATGCCCCAGATTAAGCCACACGTA

Basic information

species Zea mays
transcript GRMZM5G860543_T01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcgccacggctttgattcggccgttcaccggcgtacctcgtcgcgcggcagCACCACCATCTCTGGGAGGTGCCTGGCTGCCGAGGTGTAGTTGGGGGCGATGCGGTGACCCTTGGTTCAGCGATGAATGCCCCAGATTAAGCCACACGTA
             ctttgat  putative branch site (score: 5)
                                       cctcgtc  putative PPT
              tttgatt  TA-rich tract