1 5' 3' | 2 5' 3' | 3 5' 3' |
...cggtgaatatttttgctaatatattttttagttgtagaccatcatgtggtaattgcattagcttgccctaaaagtggaggagatatgttattttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAGCAAGGATGATCTGAGGAAGACCATTACTGAAATCCTCAAGAAAGTTGA
species | Zea mays |
transcript | GRMZM5G859592_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|60394022|gb|DN226892.1|DN226892
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|60359543|gb|DN226516.1|DN226516
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|60342848|gb|DN209821.1|DN209821
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|61118457|gb|DN559418.1|DN559418
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|60340221|gb|DN207194.1|DN207194
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|213192952|gb|FM183710.1|FM183710
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAG-AACCCACAGCGGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|60344920|gb|DN211893.1|DN211893
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAEST: gi|30087353|gb|CB885559.1|CB885559
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
EST: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGNNNNNNNGTCATCAG GCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
genomic: GAAGAAGAAACCCACAGCAGAAAAGGAGATCAAAGAAAAAAAGTCATCAGgtaaagtagt ... ttttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCA
gtggtaattgcattagcttgccctaaaagtggaggagatatgttattttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAGCAAGGATGATCTGAGGAAGACCATTACTGAAATCCTCAAGAAAGTTGA
ccctaaa putative branch site (score: 206)
ttatttt putative PPT
atatgttattttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggtgaatatttttgctaatatattttttagttgtagaccatcatgtggtaattgcattagcttgccctaaaagtggaggagatatgttattttatgtagGCAAAAAGGTGACAAAGGGTAAAGGAGAATCCGTTGAAGCAGTTCTTCCCAGCAAGGATGATCTGAGGAAGACCATTACTGAAATCCTCAAGAAAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgcatt