Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccgccgccgtcgtcttctccatctggaatttggtttgtattccggcgggactcttgagcttgagttcgcctcgccggctcgccctgcacagGAGGCTGCCCGGAAGGTCGGGGAGGAGCTCGTCAGGGTGTGCAACGAGTTGGGCATCTCCGAGGTCTCCTACGACCGCAACGGCTTTGCTCGAGGCGACA

Basic information

species Zea mays
transcript GRMZM5G857303_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G857303_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g07340.1 (Oryza sativa), 3'ss of exon 2
--------gtaagccgccgccgtcgtcttctccatctgg-aatttggtttgtattccggcgggactcttgagcttgagttcgcctcgccggctcgccctgcacagGAGGCTGCCCGGAAGGTCGGGGAGGAGCTCGTCAGGGTGTGCAACGAGTTGGGCATCTCCGAGGTCTC---CTACGACCGCAACGGCTTTGCTCGAGGCGACA
           |  || ||||  |      | || || | |||| |   |  | | |  |     | ||||  |    ||   || || |||| |   || ||||||||| ||  ||| |||||||||||||||| |||||| |||||| ||| ||| |||| ||||| ||||   ||||||||||||||| ||||||||||| |   
ataggacttctaaacgacgcctccaagaatttcacctagtaattagacataaactgct-catttgtattgatatc---ttgagctggctggcttgttgtg-acagGAGGCAGCTGGGAGGGTCGGGGAGGAGCTCATCAGGGCGTGCAAGGAGCTGGACATCACCGAGATCTCGTCCTACGACCGCAACGGGTTTGCTCGAGGGG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattccggcgggactcttgagcttgagttcgcctcgccggctcgccctgcacagGAGGCTGCCCGGAAGGTCGGGGAGGAGCTCGTCAGGGTGTGCAACGAGTTGGGCATCTCCGAGGTCTCCTACGACCGCAACGGCTTTGCTCGAGGCGACA
                                         ctcgccct  CT-rich tract