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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAACAGCCCCGTACCTCACAGCCTCCTCGTCCCCATCAGGAGGAGCGGGAGCCTCGCATCGTCTCCCTACCCGCCTCCCTACTTCGGCACGAGCACATgtaagcgaagaaagagaggaggacgcaaaaagcaaaggcgaccgagagtgctgagtgctattgcctgggcgctagcttcagtagttcagttccatcatgcacatcgacatgataaaaaagccgcgtcggttctttccttttcggaatcttgattggcgctgctgcttgttgcctgttggcacag

Basic information

species Zea mays
transcript GRMZM5G853392_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G853392_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g51970.1 (Oryza sativa), 5'ss of exon 1
---------GCGAACAGCCCCGTACCTCACAGCCTCCTCGTCCCCATCAGGAGGAGCGGGAGCCTCGCATCGTCTCCCTACCCGCCTCCCTACTTCGGCACGAGCACATgtaagcgaagaaagagaggaggacgcaaaaagcaaaggcgaccgagagtgctgagtgctattgcctgggcgctagcttcagtagttcagttccatcatgcacatcgacatgataaaaaagccgcgtcggttctttccttttcggaatcttgattggcgctgctgcttgttgcctgttggcacag---
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TACTTGGCTGCGAATAGCCCTGTACCACACAGCCTCCTCATCCCCATCAGGAGGAGC------CTCACATCG---CCCTACTCACCTGCCTACTTTGGCTCAAGCACATgtaagccaagaaatgggaaaggaagca------------gatcaa-----ccgaatgcttt---cttggctttagttcc----------tttcatcatggactgatatttatgataaaagctg----------ttccattccctgatcttggttg-cattgcccttggttgggtttttgctttgcag