1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttctacgtaccgactcctcttctttttctttgacctgcctgatgatatatacattggtcctcatcaagattgacttaatttgtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGTAGCGGACATGGATTTGCCACCGCTCATTCAGGAGAGCAGCGGCGGCGGC
species | Zea mays |
transcript | GRMZM5G852338_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAG CATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGTEST: gi|211128089|gb|FL016621.1|FL016621
genomic: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAGgttctacgta ... gtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGT
EST: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAG CATACCGTTCTTCGTGGGATGACTTCACEST: gi|88750549|gb|DY534690.1|DY534690
genomic: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAGgttctacgta ... gtgactgcagCATACCGTTCTCCGTGG-ATGACTTCAC
EST: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAG CATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGTEST: gi|16925511|gb|BM078579.1|BM078579
genomic: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAGgttctacgta ... gtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGT
EST: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAG CATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGTEST: gi|28983818|gb|BQ538836.2|BQ538836
genomic: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAGgttctacgta ... gtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGT
EST: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAG CATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGT
genomic: CCGTCGGCGCACGACGACATCAACTCGTTCCTGCTAGACGATGACTTCAGgttctacgta ... gtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGT
gcctgatgatatatacattggtcctcatcaagattgacttaatttgtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGTAGCGGACATGGATTTGCCACCGCTCATTCAGGAGAGCAGCGGCGGCGGC
atgatatatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctacgtaccgactcctcttctttttctttgacctgcctgatgatatatacattggtcctcatcaagattgacttaatttgtgactgcagCATACCGTTCTCCGTGGATGACTTCACGAAGCTGATAGTGCACGTCGACGTAGCGGACATGGATTTGCCACCGCTCATTCAGGAGAGCAGCGGCGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG