1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttcccttctctttgtgttggcttgatatttctgtacgttgagagaaccacataatgaatttgatcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCAAGGACCTACAAGAACTCAGGGTGTTTCCATCAGAATTTTATGTTCCTG
species | Zea mays |
transcript | GRMZM5G848945_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGG GTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCEST: gi|91875772|gb|EB405729.1|EB405729
genomic: CTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGGgtgagttccc ... tcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
EST: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGG GTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCEST: gi|60344695|gb|DN211668.1|DN211668
genomic: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGGgtgagttccc ... tcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
EST: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGG GTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCEST: gi|60398893|gb|DN231709.1|DN231709
genomic: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGGgtgagttccc ... tcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
EST: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGG GTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCEST: gi|78092941|gb|DV521315.1|DV521315
genomic: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGGgtgagttccc ... tcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
EST: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGG GTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCEST: gi|60350818|gb|DN217791.1|DN217791
genomic: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGGgtgagttccc ... tcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
EST: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGG GTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
genomic: CTGATCTAGCTAAAATGGTCAGCCGCTGTGTGAAACTCCAGCGTCTCTGGgtgagttccc ... tcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGC
ggcttgatatttctgtacgttgagagaaccacataatgaatttgatcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCAAGGACCTACAAGAACTCAGGGTGTTTCCATCAGAATTTTATGTTCCTG
atttgat putative branch site (score: 109)
tcctccac CT-rich tract
ataatgaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcccttctctttgtgttggcttgatatttctgtacgttgagagaaccacataatgaatttgatcctccacagGTACTGGATTGCATTTCAGATAAGGGTTTGCAAGTGGTGGCCTCCAGTTGCAAGGACCTACAAGAACTCAGGGTGTTTCCATCAGAATTTTATGTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC