1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatggaatgtctactttaatgtgagattatctgctctaccattgctgttggtacctattactggattttttttttcctgagcaaagtcggttaaacttgtgattctttgtatcgttcagGTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATGTGTATCG
species | Zea mays |
transcript | GRMZM5G848768_T04 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGTAAATGGAGGCGCGATTGCCCTTGGACACCCTCTGGGTGCAACAG GTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAGEST: gi|111195424|gb|EE293559.1|EE293559
genomic: ATGTAAATGGAGGCGCGATTGCCCTTGGACACCCTCTGGGTGCAACAGgtaatggaat ... tatcgttcagGTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAG
EST: GGGTGCAACAG GTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAGEST: gi|16927281|gb|BM080350.1|BM080350
genomic: GGGTGCAACAGgtaatggaat ... tatcgttcagGTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAG
EST: AAATGTAAATGGAGGCGCGATTGCCCTTGGACACCCTCTGGGTGCAACAG GTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAG
genomic: AAATGTAAATGGAGGCGCGATTGCCCTTGGACACCCTCTGGGTGCAACAGgtaatggaat ... tatcgttcagGTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAG
attttttttttcctgagcaaagtcggttaaacttgtgattctttgtatcgttcagGTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATGTGTATCG
ttctttgt CT-rich tract
ttaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggaatgtctactttaatgtgagattatctgctctaccattgctgttggtacctattactggattttttttttcctgagcaaagtcggttaaacttgtgattctttgtatcgttcagGTGCCCGGTGTGTGGCTACTCTTCTAAATGAAATGAAGCGCCGGGGCAGAGACTGCAGATTTGGTGTTGTCACCATGTGTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT