1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggtctacctgactgaccatttctttttcattgcccatcattcatcgtgatagttgatggttgaagtcttctggatacatacacgcgctggagtatgtatctgtaacgcctttctcccttgtgttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
species | Zea mays |
transcript | GRMZM5G848603_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|71771831|gb|DR969768.1|DR969768
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|71421242|gb|DR805356.1|DR805356
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCTTCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATTTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|78110730|gb|DV529128.1|DV529128
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|211455215|gb|FL443682.1|FL443682
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|149107875|gb|EE292236.2|EE292236
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|71306517|gb|DR789416.1|DR789416
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|76014004|gb|DT941174.1|DT941174
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAGEST: gi|71315893|gb|DR794634.1|DR794634
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
EST: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGG GGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
genomic: AGCAACATCATCTTCTCCAACGGAATGCGAGACCCATGGAGCCGTGGCGGgtaggtctac ... ttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
atacacgcgctggagtatgtatctgtaacgcctttctcccttgtgttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
ctgtaac putative branch site (score: 3)
cctttctcccttgtgt CT-rich tract
tatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtctacctgactgaccatttctttttcattgcccatcattcatcgtgatagttgatggttgaagtcttctggatacatacacgcgctggagtatgtatctgtaacgcctttctcccttgtgttgcgaccagGGTGCTCAAGAACATCTCGTCCAGCATCATCGCCCTTGTTACAGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC