1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagggttggcttggtagggtttctgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA
species | Zea mays |
transcript | GRMZM5G841900_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCGGGCGCCGCCGCATCGTGCCGSCCKCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|211118860|gb|FL110175.1|FL110175
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|211102904|gb|FK962285.1|FK962285
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|211118861|gb|FL110176.1|FL110176
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|211118854|gb|FL110169.1|FL110169
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCNCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|76012394|gb|DT939564.1|DT939564
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|211118858|gb|FL110173.1|FL110173
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCG-CGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|211102910|gb|FK962291.1|FK962291
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|211118856|gb|FL110171.1|FL110171
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCAYCGTGCCGCCCGCACCTGCCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|211118859|gb|FL110174.1|FL110174
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|211102909|gb|FK962290.1|FK962290
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGASGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|211102911|gb|FK962292.1|FK962292
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGSACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|148939988|gb|EC884719.2|EC884719
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|74244670|gb|DT652584.1|DT652584
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|50328543|gb|CO523669.1|CO523669
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGGCTGCAGEST: gi|211102902|gb|FK962283.1|FK962283
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACG---A--C--CAGgtagggttgg ... tggg
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAGEST: gi|71428020|gb|DR809070.1|DR809070
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGEST: gi|211102903|gb|FK962284.1|FK962284
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
EST: CACCGGGCGCCGSCGCATCGTGCCGCCMGCACCTGGCTCCGACGAACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCACAEST: gi|211118857|gb|FL110172.1|FL110172
genomic: CACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGA-CCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCA
EST: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG AGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... tgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAG
tgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA
ttctgat putative branch site (score: 4)
ttcgttt putative PPT
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggttggcttggtagggtttctgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgggctgcagAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGTGCCGCAGCCGGGAAGCGTCGTCATCGCCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT