1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAATCAGTTGGACTGAGATGCAATGTGATTTGACCGGTCAAATTGAGCAAAGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGgtaaacatgttagtaacttatcttaatttgagctttcccttgtgtgggatacatgtacttctatctggaaagtatgtttttcatgtactagaatgctgat...
species | Zea mays |
transcript | GRMZM5G841900_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|50328542|gb|CO523668.1|CO523668
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGG TEST: gi|71428019|gb|DR809069.1|DR809069
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAAT-Ggtaaacatgt ... catgaaacag-
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATG GTGGTGGCGGTATACAAATTGTGGACCAGTGACACCAGGTCCTTGGGCGGAEST: gi|148939987|gb|EC884718.2|EC884718
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGgtaaacatgt ... catgaaacagGTGGTGGCGGTATACAAATTGTGGACCAGTGACACCAGGTCCTTGGGCGGA
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATG GTGGTGGCGGTATACAAATTGTGGACCAGTGACACCAGGTCCTTGGGCGGAEST: gi|213183241|gb|FM192423.1|FM192423
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGgtaaacatgt ... catgaaacagGTGGTGGCGGTATACAAATTGTGGACCAGTGACACCAGGTCCTTGGGCGGA
EST: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATG GTGGTGGCGGTATACAAATTGTGGACCAGTGACACCAGGTCCTTGGGCGGA
genomic: AGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGgtaaacatgt ... catgaaacagGTGGTGGCGGTATACAAATTGTGGACCAGTGACACCAGGTCCTTGGGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATCAGTTGGACTGAGATGCAATGTGATTTGACCGGTCAAATTGAGCAAAGGAAAGTTGCAAAGGTGGAATAGATGTGCTGTGGCCCTCCTGATAAATGgtaaacatgttagtaacttatcttaatttgagctttcccttgtgtgggatacatgtacttctatctggaaagtatgtttttcatgtactagaatgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA