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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGCCGGACGTGGCGCCTACGCCGACGGTCGCTCTGTGCGCGCGTCGGTCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttggcttggtagggtttctgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgg

Basic information

species Zea mays
transcript GRMZM5G841900_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G841900_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g57070.1 (Oryza sativa), 5'ss of exon 1
CGCGGCCGGACGTGGCGCCTACGCCGACGGTCGCTCTGTGCGCGCGTCGGTCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggtt--------------ggcttggtagggtttctgatttccttttgttttgtgcgtgtgatgagttggtttgttcgtttgg------
|   || || |  ||||||||||||||||| ||||  |||||||||||  |||| || |  |||||| ||||||||||  | || ||||||  ||| |||||||||||              |  ||||| | |  || |||| |  ||    | ||  | ||| |  ||||||| | |  |||||      
CCTAGCGGGGCTCGGCGCCTACGCCGACGGCCGCTGCGTGCGCGCGTCCATCACTGGCCATCGCCGCCTCGTGCCGCCTCCTCCCGGCTCCACCGATCAGgtagggttcagctagggttttggatttggtggcgcctcggattcctcttctgatggtctgcgtggttggttggttcgat--tttggctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148939988|gb|EC884719.2|EC884719
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACG---A-                         -C--CAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... gttcgtttggGCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
EST: gi|50328543|gb|CO523669.1|CO523669
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAG                         GCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... gttcgtttggGCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
EST: gi|211118861|gb|FL110176.1|FL110176
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACG---A-                         -C--CAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... gttcgtttggGCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
EST: gi|76012394|gb|DT939564.1|DT939564
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACG---A-                         -C--CAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... gttcgtttggGCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
EST: gi|74244670|gb|DT652584.1|DT652584
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACG---A-                         -C--CAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... gttcgtttggGCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
EST: gi|71428020|gb|DR809070.1|DR809070
EST:     TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACG---A-                         -C--CAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT
genomic: TCACCGGGCGCCGCCGCATCGTGCCGCCCGCACCTGGCTCCGACGACCAGgtagggttgg ... gttcgtttggGCTGCAGAGATCCACGGTGGAGGTGGTGGGGCACAAGGCCCATGGAGCTGT