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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTGAAGACAAGCGTGAAGAAGAGATCCGTGAACCCCATATGGCAAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagcagcaagcagaacgatcctgtttgtgattcattattctagactgtttgcatacag

Basic information

species Zea mays
transcript GRMZM5G840582_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21390418|gb|BQ528467.1|BQ528467
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21329817|gb|BQ485198.1|BQ485198
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21329951|gb|BQ485332.1|BQ485332
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|32869764|gb|CF009446.1|CF009446
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|7216810|gb|AW562932.1|AW562932
EST:     ACTCTGACCGTCGCAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGNCACCTTCAGCAGAGGCGACCCCATGGGAGACGCG
genomic: ACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|5816412|gb|AI987328.1|AI987328
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21391035|gb|BQ529084.1|BQ529084
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21329764|gb|BQ485131.1|BQ485131
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|87154658|gb|DY399447.1|DY399447
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21329947|gb|BQ485328.1|BQ485328
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|71434127|gb|DR815177.1|DR815177
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|78105903|gb|DV524321.1|DV524321
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGGTG                       
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGC---TGgtgagtgagc ... ttgcatac
EST: gi|78105903|gb|DV524321.1|DV524321
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGGTG                       
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGC---TGgtgagtgagc ... ttgcatac
EST: gi|76011564|gb|DT938734.1|DT938734
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|76011565|gb|DT938735.1|DT938735
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21480762|gb|BQ577445.1|BQ577445
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21481419|gb|BQ578102.1|BQ578102
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAA----                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|71769124|gb|DR967061.1|DR967061
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGGTG                       
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGC---TGgtgagtgagc ... ttgcatac
EST: gi|71769124|gb|DR967061.1|DR967061
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGGTG                       
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGC---TGgtgagtgagc ... ttgcatac
EST: gi|32870245|gb|CF009927.1|CF009927
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|50334092|gb|CO529218.1|CO529218
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21329792|gb|BQ485173.1|BQ485173
EST:     CTCTGACCG-CACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTG-CCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: CTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21481035|gb|BQ577718.1|BQ577718
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCCATGGGAGACGC
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCC-ATGGGAGACGC
EST: gi|21480829|gb|BQ577512.1|BQ577512
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|71431232|gb|DR812282.1|DR812282
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21481478|gb|BQ578161.1|BQ578161
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21330631|gb|BQ486012.1|BQ486012
EST:     AGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21330134|gb|BQ485515.1|BQ485515
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21626445|gb|BQ621366.1|BQ621366
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|32869036|gb|CF008718.1|CF008718
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|22545220|gb|BU097579.1|BU097579
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|87154082|gb|DY398871.1|DY398871
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|26455021|gb|CA826604.1|CA826604
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|32870282|gb|CF009964.1|CF009964
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|26455173|gb|CA826756.1|CA826756
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21480818|gb|BQ577501.1|BQ577501
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21480842|gb|BQ577525.1|BQ577525
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21330897|gb|BQ486278.1|BQ486278
EST:     CAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: CAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|50329733|gb|CO524859.1|CO524859
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|71431231|gb|DR812281.1|DR812281
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
EST: gi|21481144|gb|BQ577827.1|BQ577827
EST:     AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTG                         GAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG
genomic: AAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 47 (downstream exon)
Score: 31

AAACTGAAGACAAGCGTGAAGAAGAGATCCGTGAACCCCATATGGCAAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCGGAGGTGGACGTGGCGCCACTGATGGAGGCGGTGAGCATGAACCCGCGGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 126

AAACTGAAGACAAGCGTGAAGAAGAGATCCGTGAACCCCATATGGCAAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCGGAGGTGGACGTGGCGCCACTGATGGAGGCGGTGAGCATGAACCCGCGGG


Block sizes: 49 (upstream exon), 22 (downstream exon)
Score: 4

AAACTGAAGACAAGCGTGAAGAAGAGATCCGTGAACCCCATATGGCAAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCGGAGGTGGACGTGGCGCCACTGATGGAGGCGGTGAGCATGAACCCGCGGG


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 47

AAACTGAAGACAAGCGTGAAGAAGAGATCCGTGAACCCCATATGGCAAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagc ... ttgcatacagGAGGTGTTCGACAAGGACACCTTCAGCAGAGACGACCCCATGGGAGACGCGGAGGTGGACGTGGCGCCACTGATGGAGGCGGTGAGCATGAACCCGCGGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTGAAGACAAGCGTGAAGAAGAGATCCGTGAACCCCATATGGCAAGAGGAGCTAACTCTGACCGTCACAGATCCCAGCCAACCACTGAAGCTGgtgagtgagcagcaagcagaacgatcctgtttgtgattcattattctagactgtttgcatacag

- - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG