1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACGGCATCGCATCCGATTCCGTCGCCAGCATGACGTCCAGAGGCGACGACGACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccctcgtcatgacaattgatctcgtcttggcatgcatttgcagtgagccgatgaacaagtgatcgagtgacttcactcgttcgtggatttggcag
species | Zea mays |
transcript | GRMZM5G838196_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|148962266|gb|EE013089.2|EE013089
genomic: TGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|13557980|gb|BG549336.1|BG549336
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|211164012|gb|FL463865.1|FL463865
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCAEST: gi|211467384|gb|FL438565.1|FL438565
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
EST: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAG CTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
genomic: GACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccct ... gatttggcagCTCTGGCGACAAGGGGCTCAAGCCTCTGTTCGTGATCCCCCATGACAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCATCGCATCCGATTCCGTCGCCAGCATGACGTCCAGAGGCGACGACGACTGCCTTCTTCCCCTCGAGCACTGGGCTCAGATAGCCAAGGAGATCAGgtgcatccctcgtcatgacaattgatctcgtcttggcatgcatttgcagtgagccgatgaacaagtgatcgagtgacttcactcgttcgtggatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA