Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattcttttcaatgggtaatatgttatcttggcattttccctgttgacccagttaagtaatatgtgatgaatgcagacactccaccaaatgtttgttgtgaatgctggcagTGGATTTAAGTGGATCTGGAACAGCGTGAAGGGCTTCCTTGACCCAAAAACTTCATCCAAGATTCAT

Basic information

species Zea mays
transcript GRMZM5G834778_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G834778_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g38850.1 (Oryza sativa), 3'ss of exon 6
gtaattattcttttcaatgggtaatatgtta--tcttggcattttccctgt-tgacccagttaagtaatatgtgatgaatgcagacactccaccaaatgtttgttgtgaatgctggcagTGGATTTAAGTGGATCTGGAACAGCGTGAAGGGCTTCCTTGACCCAAAAACTTCATCCAAGATTCAT
||  ||  |  ||||| || |||||  |||   |  || || | |     | |||   |  | | |   |  | || |||||||||| | || ||||||||||| ||||| || ||||| || || |||| ||||||||| |||||||||||||| || |||||||||||||||||||||||||  
gtcgtttctaatttcattgcgtaatgggttcgttgctgccagtatttggatctgaagaaactcatttgaactt-ataaatgcagACATTACATCAAATGTTTGTCGTGAACGCCGGCAGCGGGTTCAAGTTGATCTGGAATAGCGTGAAGGGCTTTCTGGACCCAAAAACTTCATCCAAGATTC--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatatgtgatgaatgcagacactccaccaaatgtttgttgtgaatgctggcagTGGATTTAAGTGGATCTGGAACAGCGTGAAGGGCTTCCTTGACCCAAAAACTTCATCCAAGATTCAT
                              aaatgttt  TA-rich tract