1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACTACATCTGATATGGCCGAAGGGACAGTCATTAAATGCACATTCACTGCTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATGgtgaggcagcctcaaaacacctttgctatgtttctttttttcttctttttattgaggggtccatgcctgtatgtttgtcgtctcactttgttctatgttggaacgtgtgggtggcag
species | Zea mays |
transcript | GRMZM5G833477_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATG AGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAAAATGCEST: gi|31352625|gb|CD436982.1|CD436982
genomic: CTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATGgtgaggcagc ... tgggtggcagAGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAAAATGC
EST: CTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATG AGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAAAATGCEST: gi|31351452|gb|CD435809.1|CD435809
genomic: CTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATGgtgaggcagc ... tgggtggcagAGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAAAATGC
EST: CTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATG AGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAAAATGC
genomic: CTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATGgtgaggcagc ... tgggtggcagAGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAAAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTACATCTGATATGGCCGAAGGGACAGTCATTAAATGCACATTCACTGCTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTGCTTCAGCGCAGATGgtgaggcagcctcaaaacacctttgctatgtttctttttttcttctttttattgaggggtccatgcctgtatgtttgtcgtctcactttgttctatgttggaacgtgtgggtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG