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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctgttctggatgcatggattttcaaattgcatgttcaaaagcatacattattttctctcagcaatttcacctcaatgtaactcttccatttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA

Basic information

species Zea mays
transcript GRMZM5G832108_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33091787|gb|CF051781.1|CF051781
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|30086960|gb|CB885168.1|CB885168
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60343976|gb|DN210949.1|DN210949
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|15053958|gb|BI359503.1|BI359503
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|30031590|gb|CB833441.1|CB833441
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|18174180|gb|BM349568.1|BM349568
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60337967|gb|DN204940.1|DN204940
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|29543841|gb|CB604221.1|CB604221
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|71325732|gb|DR799552.1|DR799552
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|4885938|gb|AI677058.1|AI677058
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|211136691|gb|FL282485.1|FL282485
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|18384481|gb|BM417680.1|BM417680
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|15208760|gb|BI430644.1|BI430644
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGNGAGAGATGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|31910679|gb|CD651545.1|CD651545
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGGGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|78027517|gb|DV495904.1|DV495904
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|24765547|gb|CA400706.1|CA400706
EST:     GCGAAGTCCATTCATCACGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|6742614|gb|AW313429.1|AW313429
EST:     TCATGCTCGTGTGCTCATCAGGCAACGCCGCATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: TCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|28361732|gb|CB240088.1|CB240088
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|9566221|gb|BE475730.1|BE475730
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCCCATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|22714268|gb|BU197466.1|BU197466
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|211531730|gb|FL446806.1|FL446806
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|18384622|gb|BM417821.1|BM417821
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|16918861|gb|BM073928.1|BM073928
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|24767175|gb|CA402319.1|CA402319
EST:     GCGAAGTCCATTCATCACGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|16926997|gb|BM080065.1|BM080065
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|6342756|gb|AW165580.1|AW165580
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|87298788|gb|DY470791.1|DY470791
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|31359739|gb|CD444096.1|CD444096
EST:     GCGAAGTCCATTCATCACGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|16745915|gb|BM032345.1|BM032345
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|31910677|gb|CD651544.1|CD651544
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|22715359|gb|BU197721.1|BU197721
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60340560|gb|DN207533.1|DN207533
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|78026348|gb|DV494735.1|DV494735
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60359115|gb|DN226088.1|DN226088
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60399534|gb|DN232345.1|DN232345
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60352328|gb|DN219301.1|DN219301
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|30031591|gb|CB833442.1|CB833442
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60336920|gb|DN203893.1|DN203893
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|60356819|gb|DN223792.1|DN223792
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|29167836|gb|CB411096.1|CB411096
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|31358049|gb|CD442406.1|CD442406
EST:     GCGAAGTCCATTCATCACGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|28361535|gb|CB239891.1|CB239891
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|67019676|gb|CO448425.1|CO448425
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|29544273|gb|CB604653.1|CB604653
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|4776262|gb|AI665265.1|AI665265
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|9461810|gb|BE453916.1|BE453916
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCCCATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|30031835|gb|CB833686.1|CB833686
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|166546603|gb|EG193985.1|EG193985
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGGAGGCAACTTGTCAACATTCCCTCATTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGG-AGGCAACTTGTCAACATTCCCTCATTC
EST: gi|16926319|gb|BM079387.1|BM079387
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|28873527|gb|CB329505.1|CB329505
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTC
EST: gi|166461559|gb|EG299541.1|EG299541
EST:     GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAG                         AGTTGGGAGGCAACTTGTCAACATTCCCTCATTC
genomic: GCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 189

AGAACTTTCTGCAGCGCCGCCTTCAGACCATTGTCTTCAAGAATGGCATGGCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 400

AGAACTTTCTGCAGCGCCGCCTTCAGACCATTGTCTTCAAGAATGGCATGGCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 275

AGAACTTTCTGCAGCGCCGCCTTCAGACCATTGTCTTCAAGAATGGCATGGCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 176

AGAACTTTCTGCAGCGCCGCCTTCAGACCATTGTCTTCAAGAATGGCATGGCGAAGTCCATTCATCATGCTCGTGTGCTCATCAGGCAACGCCACATTAGgtacaaacaa ... atttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacattattttctctcagcaatttcacctcaatgtaactcttccatttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA
                                atgtaac  putative branch site (score: 176)
                                      ctcttccatttctgc  CT-rich tract
     ttattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttctgttctggatgcatggattttcaaattgcatgttcaaaagcatacattattttctctcagcaatttcacctcaatgtaactcttccatttctgcagAGTTGGGAGGCAACTTGTCAACATTCCCTCATTCATGGTGAGAGTTGACTCAGAGAAGCACATCGACTTCTCTCTTACCAGCCCACTTGGTGGTGGAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - tgttctg
- - - - - - -tgcatgg
- - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - caaaagca