Sequence
atgc intronic sequence ATGC exonic sequenceTTATGGTTTGAACTTGTTTGTGATAATAGCAAGCACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagataaaccactgcaagatgctgaagtgaattattcaaacatttcaaaaaaatattgtatgtgctgttttgagtatcattgctctgtaacttgagtgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G830874_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g08270.3 (Oryza sativa), 5'ss of exon 4
TTATGGTTTGAACTTGTTTGTGATAATAGCAAGCACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagataaacc--actgcaagatgctgaagtgaattattcaaacatttcaaaaaaatattgtatgtgctgttttgagtatcattgctctgtaac--ttgagtgc---
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-----------------------------CAAACATGTTTTTGGAATCAAAGGATGAAGCTCATGATTTTGCAAGCCTACGGCATGCGCTTCTGGAACAGgtgcatatgctctacttttcgatactaaatt--attgtt-acatattttaaaaccaaattat-tgtgca--tgtgagcat-gttgttaaataaatattgacagtattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211046341|gb|FL092969.1|FL092969EST: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAG GAGCTATACAGTATACAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACA
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagataaac ... tacattgcagGAGCTATACAGTATACAAAGCCTGTTGGCTCAGGAGAAGGCTAGAGAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGGTTTGAACTTGTTTGTGATAATAGCAAGCACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagataaaccactgcaagatgctgaagtgaattattcaaacatttcaaaaaaatattgtatgtgctgttttgagtatcattgctctgtaacttgagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaat