1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...accacagcatgccactgtttcctttcttttgtcagtttttatttccccgctgggtcctgtacctccatgtttcctcactggggttaccattttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTGCGATGGAGGAGAAGGCTATGGCAAATGGAGCAGCGACTGCTGATGTTG
species | Zea mays |
transcript | GRMZM5G830403_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAG---C---T---C-C-AG TTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTEST: gi|211042158|gb|FL156960.1|FL156960
genomic: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAGgtccgaaaaa ... tttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
EST: TTCTCAGGCGGGCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAG TTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTEST: gi|20507251|gb|BQ279549.1|BQ279549
genomic: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAGgtccgaaaaa ... tttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
EST: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAG---C---T---C-C-AG TTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTEST: gi|211042159|gb|FL156961.1|FL156961
genomic: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAGgtccgaaaaa ... tttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
EST: TCTCAGGCGGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAG TTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTEST: gi|211042160|gb|FL156962.1|FL156962
genomic: TCTCAGGC-GGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAGgtccgaaaaa ... tttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
EST: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAG TTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTEST: gi|211042157|gb|FL156959.1|FL156959
genomic: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAGgtccgaaaaa ... tttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
EST: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAG TTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
genomic: TTCTCAGGCGGCCCCCTGCTGCTCACCGCCCAGCTCCAGGTACGCGCGAGgtccgaaaaa ... tttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCT
cccgctgggtcctgtacctccatgtttcctcactggggttaccattttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTGCGATGGAGGAGAAGGCTATGGCAAATGGAGCAGCGACTGCTGATGTTG
ttttaac putative branch site (score: 378)
ccatttt CT-rich tract
attttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accacagcatgccactgtttcctttcttttgtcagtttttatttccccgctgggtcctgtacctccatgtttcctcactggggttaccattttaacacagTTATTAGAGAAATAAGGGTCGGCTTGGTTGCCCGAGGCCTACCCAGCGCCTGCGATGGAGGAGAAGGCTATGGCAAATGGAGCAGCGACTGCTGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT