1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGATCGTGTCGGAGGTCCGGGCGATACTCAGGCAGCCGTCGGCGGTGGCCAAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatcgatcagtcatcagtgttctcttcactatttgtccacagcctgcaacgccggccgccggcggataggaagtacttcataggaactgagggtgctctttgtttgcgccttgtgtctcggtctcgcag
species | Zea mays |
transcript | GRMZM5G829946_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|31355157|gb|CD439514.1|CD439514
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|50326841|gb|CO521967.1|CO521967
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGCCCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCCCCTGATGGGGGTGGACGGCGTEST: gi|93017159|gb|EB642679.1|EB642679
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|78180580|gb|DV550908.1|DV550908
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|26455300|gb|CA826883.1|CA826883
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|87154706|gb|DY399495.1|DY399495
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|12046438|gb|BF728577.1|BF728577
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|71429646|gb|DR810696.1|DR810696
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|24769990|gb|CA405119.1|CA405119
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|6964668|gb|AW433361.1|AW433361
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAN CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|21236541|gb|BQ441992.1|BQ441992
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|6973514|gb|AW438208.1|AW438208
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|71307445|gb|DR789929.1|DR789929
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|110206346|gb|EC888243.1|EC888243
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCCCCTGATGGGGGTGGACGGCGTEST: gi|31349103|gb|CD433460.1|CD433460
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|148964440|gb|EE015554.2|EE015554
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCCCCTGATGGGGGTGGACGGCGTEST: gi|24769781|gb|CA404910.1|CA404910
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCCCCTGATGGGGGTGGACGGCGTEST: gi|74237764|gb|DT645678.1|DT645678
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAA CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGTEST: gi|24763547|gb|CA398719.1|CA398719
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
EST: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTCCGGTCAGCTCAC CAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
genomic: AAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatc ... ggtctcgcagCAACGTGGCGGAGGTGGTGTACGTGCAGCACCTGATGGGGGTGGACGGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCGTGTCGGAGGTCCGGGCGATACTCAGGCAGCCGTCGGCGGTGGCCAAGATCAAGGAGGCCAACAAACTGTCGCTGATGACCTACGGTCAGCTCAAgtgagtcatcgatcagtcatcagtgttctcttcactatttgtccacagcctgcaacgccggccgccggcggataggaagtacttcataggaactgagggtgctctttgtttgcgccttgtgtctcggtctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA