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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcattgaagtaaaatgtgacaagtatttttacctggaggaagtattattttatgtaagccgttaaattctaacaatataatttgacatgttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTTGTGCAACCAACAATTATGGAAATTACACGTTCTGCACCAGTTGTGAAAG

Basic information

species Zea mays
transcript GRMZM5G820733_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820733_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g26880.4 (Oryza sativa), 3'ss of exon 9
-----tgcattgaagtaaaa---tgtgacaagtattttta-cctggaggaagt--attattttatgtaagccgttaaattctaacaatataatttgacatgttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTTGTGCAACCAACAATTATGGAAATTACACGTTCTGCACCAGTTGTGAAAG
     |  |||  ||  |||   | |  ||  ||  | |  ||| ||    ||   | ||||| ||||||| ||  ||||  |   | ||    | |  ||       ||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| || ||||||||| |||||||| |||  |||||||| ||||||| ||
gtgaatctattagagcgaaaccatttagcatttacctgtggccttgaattggttggtgattttctgtaagcagt--aatttgactgacat--cctaatttg-------cagGGGGGAAAAATTCTTTATGGAGGATCTGCAATTGAATCTGAGGGAAACTTTGTTCAGCCAACAATTGTGGAAATTTCACCCTCTGCACCGGTTGTGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttatgtaagccgttaaattctaacaatataatttgacatgttttattcagGGAGGGAAAATCCTTTTTGGAGGATCTGCCATTGAATCAGAAGGAAACTTTGTGCAACCAACAATTATGGAAATTACACGTTCTGCACCAGTTGTGAAAG
                                             ttttattc  CT-rich tract
                 ttaaattctaacaata  TA-rich tract