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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGGAGGACGTGTGGAGCGCCGATGCTGAGACCGAAGTGGCTCAGGGTGGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgcgtgccccatggcttagttagtcgcgcgttttgcgcgtgttgatgtgcggtggctaaatttctgtttctgtttttttttatacag

Basic information

species Zea mays
transcript GRMZM5G820727_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G845339_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 1
GAGGGGAGGACGTGTGGAGCGCCGATGCTGAGACCGAAGTGGCTCAGGGTGGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtgg---atccgcgt--------------gccccatggcttagttagtcg-------cgcgttttgcgcgtgtt-gatgtgcggtggctaaatt---tctgtttctgtttttttttatacag
||||||||||||||||||||||  | || ||| |||| ||||| ||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||||||   ||||| ||              |   ||| |||| | | |||         ||    |||  |  || |   ||| || |  |||||      |||  | ||||||||| | |||
GAGGGGAGGACGTGTGGAGCGCGCAGGCGGAGGCCGAGGTGGCGCAGGGCGGGGGTTTCCCCGAGCACCTCGTCGTCATGGTCAATGGCCTCGTCGGGAGgtggtggatccgtgttactgtttgtttttggttcatcgctttgcttgtcagctctgatgcaacctgctggcatttggcttgcagtcgtaaaattagcctggttgttttttttttttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772904|gb|DR970827.1|DR970827
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: gi|78113514|gb|DV531905.1|DV531905
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: gi|148942263|gb|EC887279.2|EC887279
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: gi|76020655|gb|DT947825.1|DT947825
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: gi|78090975|gb|DV519349.1|DV519349
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: gi|78082075|gb|DV510487.1|DV510487
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: gi|78106692|gb|DV525110.1|DV525110
EST:     GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG                         CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA