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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttagtgtacacttctcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC

Basic information

species Zea mays
transcript GRMZM5G820727_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G820727_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 3'ss of exon 5
gttatttagtgtacacttc------tcctttctatttgaaatgattgataaaatgtgtctgtatagaaatcaggtccttttattctttgtttaggct-------------------------------gtgtcaagtctaagtacagtatattattttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC
|||||||  ||||   ||       || | | | ||| ||||| ||| | || |||   |||| |||||| | || | |||  | | ||||||   |                               || |||  ||| || ||| ||| || | ||||||||||| |||||||| ||||||||||| || || |||||||||||||| || || ||||
gttattttctgtatgatttatgttgtcttatgtgtttaaaatggttggtgaa-tgtaaatgtacagaaatgaagttcattttctgtatgtttaccttcagtttcccaaagtagtccaaaaatgtttgggtatcatttctgagcacaatatgttctgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTCGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872665|gb|EB402622.1|EB402622
EST:     CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAG                         ATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT
genomic: CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagt ... ttttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT
EST: gi|108824145|gb|EC278153.1|EC278153
EST:     CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAG                         ATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT
genomic: CGCCCACTTCTCCTTCGAATGGTTGATGACTCTGATGATTTACAGTTCAGgttatttagt ... ttttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattctttgtttaggctgtgtcaagtctaagtacagtatattattttatgcagATCGGCGTTGCGTTCTTTCAAACGGCGCGTAGCATATGCTAATGCTAATTTTGACC
                                          ttatttt  CT-rich tract
                             taagtacagtatatta  TA-rich tract