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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctgaagtcggagcagaagtttgagcctcgcgagtggtacggtagaacttgcactaaccggagcaaaattcaattcgagttttgtctggctgatttttttacCTTGTGCGGCCTGGCACCGTGGTTGCTGCTGTTACGGAGAGCGTTGTCGTCGAGCTCGGCCATGGGGCAGCGCCTGTACGGGGACTGCTCGTTCTTCCTG

Basic information

species Zea mays
transcript GRMZM5G818433_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082956|gb|DV511349.1|DV511349
EST:     CGCCCCGTAGCCTTCCTGGGCGTCGCGGCGACGGCAGTCTCAGCAGATTT                         CTTGTGCGGCCTGGCACCGTGGTTGCTGCTGTTACGGAGAGCGTTGTCGTC
genomic: CGCCCCGTAGCCTTCCTGGGCGTCGCGGCGACGGCAGTCTCAGCAGATTTctgaagtcgg ... atttttttacCTTGTGCGGCCTGGCACCGTGGTTGCTGCTGTTACGGAGAGCGTTGTCGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcactaaccggagcaaaattcaattcgagttttgtctggctgatttttttacCTTGTGCGGCCTGGCACCGTGGTTGCTGCTGTTACGGAGAGCGTTGTCGTCGAGCTCGGCCATGGGGCAGCGCCTGTACGGGGACTGCTCGTTCTTCCTG
                                              tttttttac  CT-rich tract
                 aaaattcaatt  TA-rich tract