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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtgtggtttgtattttttgtctgatctatctgatgtgtcaatcagatgtgtactttgcgtttagttgaacatgtttctttactgtttttagtaccatttaattcaattggtctcattcttctattttgcagCCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGTATGCAAATTTACCGACTACTGCATCACCTTCCTTGAACAGTCTGTGCAA

Basic information

species Zea mays
transcript GRMZM5G818192_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818192_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g55700.1 (Oryza sativa), 3'ss of exon 7
gtaaggtgtggtttgtattttttgtctgatctatctgatgtgtcaatcagatgtgtactttgcgtttagttgaacatgtttctttactgtttttagtaccatttaattcaattggtctcattcttctattt----tgcagCCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGTATGCAAATTTACCGACTACTGCATCACCTTCCTTGAACAGTCTGTGCAA
||||  |||| ||  |       |||  |||||| |||| |    ||   |||  | | |   ||||| | | |    ||  |||  |  |      |  || ||| |||  |  | ||||| || |  ||    ||||||  | ||| |||| |||||||  |||||||||||| ||||||| ||||||||||||||||| || |||||||||||| | || || ||||| ||||||||
gtaatctgtgattaatgcg----gtccaatctatttgatatagtcattctatgcatccatcatgtttattggcaggctttattttgttactc-----agtatgtaactcagcttttatcatttttttgattcgtttgcagCTCTTAAGTTTGACTACTCTCGGGTTATTGATACAGCATACATCTTTAAGTATGCAAATTTGCCTACTACTGCATCAGCCTCTTTAAACAGCCTGTGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396814|gb|DN229640.1|DN229640
EST:     ATCCAAAGGAAATATTTTAATTGGCCATAGCTTACATAGAGATTTATGCG                         CCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGT
genomic: ATCCAAAGGAAATATTTTAATTGGCCATAGCTTACATAGAGATTTATGCGgtaaggtgtg ... tattttgcagCCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGT
EST: gi|60397457|gb|DN230273.1|DN230273
EST:     ATCCAAAGGAAATATTTTAATTGGCCATAGCTTACATAGAGATTTATGCG                         CCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGT
genomic: ATCCAAAGGAAATATTTTAATTGGCCATAGCTTACATAGAGATTTATGCGgtaaggtgtg ... tattttgcagCCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttactgtttttagtaccatttaattcaattggtctcattcttctattttgcagCCTTAAAGATTGATTACTCTCAAGTTATTGATACAACATACATATTTAAGTATGCAAATTTACCGACTACTGCATCACCTTCCTTGAACAGTCTGTGCAA
                   atttaat  putative branch site (score: 4)
                                  tctcattcttctattt  putative PPT
                   atttaattcaatt  TA-rich tract