1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taatcaattaatgctatgtcttactccatgaagtcatgaacaaaggcatgcacagctgttcgttgaagtatatttttacatatacatatggtttctgcagTTCTTTGATTCGAATGGTTACCCATGTCCTATGAGAAGGAACCCTTCAGACCACTTCTTGATGATGATAAACAAAGATTTCGAG
species | Zea mays |
transcript | GRMZM5G817964_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gcatgcacagctgttcgttgaagtatatttttacatatacatatggtttctgcagTTCTTTGATTCGAATGGTTACCCATGTCCTATGAGAAGGAACCCTTCAGACCACTTCTTGATGATGATAAACAAAGATTTCGAG
tttctgc CT-rich tract
ttgaagtatattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcaattaatgctatgtcttactccatgaagtcatgaacaaaggcatgcacagctgttcgttgaagtatatttttacatatacatatggtttctgcagTTCTTTGATTCGAATGGTTACCCATGTCCTATGAGAAGGAACCCTTCAGACCACTTCTTGATGATGATAAACAAAGATTTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - -tgctatg
- - - - - - - - - - - -ctccatg
- - - - - - - - - - - - - - - - - catgaac
- - - - - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -acagctg