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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTAATATAACTGGTTTGGCAACCATGGCTCTCCTGGGTGAATACCTATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtatttcattcatattaaaaacctttttatttcctttggattctttgtttgtacatgtagactccattccaatgtatttgcatacctagttagcct...

Basic information

species Zea mays
transcript GRMZM5G817310_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86470424|gb|DY236794.1|DY236794
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|71765182|gb|DR963119.1|DR963119
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|50323487|gb|CO518613.1|CO518613
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|38687313|gb|CK144344.1|CK144344
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|13557735|gb|BG549091.1|BG549091
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|38687314|gb|CK144345.1|CK144345
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGA
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGA
EST: gi|211480524|gb|FL444441.1|FL444441
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|78114214|gb|DV532603.1|DV532603
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|32910853|gb|CF015665.1|CF015665
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
EST: gi|91878443|gb|EB408400.1|EB408400
EST:     ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAA                         GTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT
genomic: ATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtattt ... ttctgttcagGTGTTTAAGCTCACATGCTAAAAGATTATAGGTGATTTCAAATGGTGTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTAATATAACTGGTTTGGCAACCATGGCTCTCCTGGGTGAATACCTATGCATCCGGCGGGAGTTGAAAGAAATTCCAATATCACGGCTTCGTGCAAgtaagtatttcattcatattaaaaacctttttatttcctttggattctttgtttgtacatgtagactccattccaatgtatttgcatacctagttagcct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA