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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctgaacatcaggacggaggaggacgaagaaggctgccggatcatcatggtgccgacacgggcgccggtgaccgcgtggctggcgccgaggataacaacaagaaagatggcgataactactactacggcagaatttgaaggcattgtacTGTTTGTTGTATGGCGCCGCTGGAGAGGGGACACACAAGGACCGAAAGGCGGTCGGCCGATTGGGGCTGCCGAATGCGAAGCCGGGTAG

Basic information

species Zea mays
transcript GRMZM5G815569_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449401|gb|DR830451.1|DR830451
EST:     CCCGGCCGTCCGCGCCGCAGTCGGGGCCGTTCCGGAACGCGGGCGCCTCC                         TGTTTGTTGTATGGCGCCGCTGGAGAGGGGACACACAAGGACCGAAAGGCG
genomic: CCCGGCCGTCCGCGCCGCAGTCGGGGCCGTTCCGGAACGCGGGCGCCTCCctgaacatca ... ggcattgtacTGTTTGTTGTATGGCGCCGCTGGAGAGGGGACACACAAGGACCGAAAGGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacaagaaagatggcgataactactactacggcagaatttgaaggcattgtacTGTTTGTTGTATGGCGCCGCTGGAGAGGGGACACACAAGGACCGAAAGGCGGTCGGCCGATTGGGGCTGCCGAATGCGAAGCCGGGTAG
                cgataac  putative branch site (score: 3)
                                     aatttgaa  TA-rich tract