1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaagtgactggaggtttagatccatttcatatttctgtgcctgtacgatgtgctacttatctggttcctgacattttgtttcactctctatccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAACTATTATCTTCTGTAGTTGGGACGCGGAAGAATACGGACTG
species | Zea mays |
transcript | GRMZM5G815165_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAG TTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAEST: gi|149019466|gb|EE154376.2|EE154376
genomic: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtca ... atccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
EST: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAG TTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
genomic: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtca ... atccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
acgatgtgctacttatctggttcctgacattttgtttcactctctatccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAACTATTATCTTCTGTAGTTGGGACGCGGAAGAATACGGACTG
tcctgac putative branch site (score: 2)
tttcactctctatcc putative PPT
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaagtgactggaggtttagatccatttcatatttctgtgcctgtacgatgtgctacttatctggttcctgacattttgtttcactctctatccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAACTATTATCTTCTGTAGTTGGGACGCGGAAGAATACGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - -tgactgg
- - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - -gcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - gtgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcctg