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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgccattgttgtttgtatgattgattagtttcatttttctttccgatcatcacacatgtttgtttcactcacagGTTCCGAATGTCAAAAGTTATGTTCAATGATATTTGTGAAGCTGTGGCGGCAGCAAATAGGTACTTAAGGTTGACACACAATGCCGCTGGGCAGGCCGGG

Basic information

species Zea mays
transcript GRMZM5G815086_T01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgattagtttcatttttctttccgatcatcacacatgtttgtttcactcacagGTTCCGAATGTCAAAAGTTATGTTCAATGATATTTGTGAAGCTGTGGCGGCAGCAAATAGGTACTTAAGGTTGACACACAATGCCGCTGGGCAGGCCGGG
 gattgat  putative branch site (score: 4)
                                       tttgtttc  putative PPT
     ttagtttcattttt  TA-rich tract