1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCAGTCTGATAATAAGCGGCAGTATGAGCTTGATGTTGACCGCATAATGCGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttgagatcactcagttttatgctacatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgggtttcag
species | Zea mays |
transcript | GRMZM5G814700_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|91877858|gb|EB407815.1|EB407815
genomic: ACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCCAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|211008041|gb|FL362435.1|FL362435
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|71307207|gb|DR789770.1|DR789770
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|33093066|gb|CF053060.1|CF053060
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|32867814|gb|CF007496.1|CF007496
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTCATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|71772002|gb|DR969939.1|DR969939
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCACEST: gi|32837478|gb|CD977156.1|CD977156
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
EST: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAA GTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
genomic: CGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttg ... tgggtttcagGTATACCTCCAAGATGCTCTTGGCTGCTATTGATGAAAGTCATAAGGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGTCTGATAATAAGCGGCAGTATGAGCTTGATGTTGACCGCATAATGCGGGGGGAAGACTCACGAACTACACTGATGATAAAGAATATCCCAAATAAgtatgttttgagatcactcagttttatgctacatttatgttctgtctcaataaaatttcttttgttctggttggctcttttgggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA