1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatgatgaaaaacgtttctgagttattacgaaggctaacatgttctggttaccatggtggtttccatactaattattatacatcgtgtaaatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTACAAGAGAAAATTAAG
species | Zea mays |
transcript | GRMZM5G814441_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGACTCCGATATCCCCGATGGGCCCAAGCTGCCCTGCGTTGGGGACAAG GAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTAEST: gi|211079891|gb|FL183265.1|FL183265
genomic: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAGgtgaggttct ... aatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
EST: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAG GAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTAEST: gi|211285450|gb|FL461546.1|FL461546
genomic: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAGgtgaggttct ... aatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
EST: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAG GAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTAEST: gi|211420107|gb|FL461548.1|FL461548
genomic: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAGgtgaggttct ... aatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
EST: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAG GAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTAEST: gi|211079889|gb|FL183263.1|FL183263
genomic: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAGgtgaggttct ... aatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
EST: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAG GAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTAEST: gi|211079890|gb|FL183264.1|FL183264
genomic: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAGgtgaggttct ... aatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
EST: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAG GAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
genomic: CCGACTCCGATATCCCCGAGGGGCCCAAGCTGCCCTGCGTTGGGGACAAGgtgaggttct ... aatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTA
ctggttaccatggtggtttccatactaattattatacatcgtgtaaatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTACAAGAGAAAATTAAG
tactaat putative branch site (score: 23)
atactaattattatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgatgaaaaacgtttctgagttattacgaaggctaacatgttctggttaccatggtggtttccatactaattattatacatcgtgtaaatgttgcagGAGCCTCTTTCCTCTTCAGCAGCCGAGTTTCAGTCTGGCAGCCCCATTTTACAAGAGAAAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -tgatgaa
- - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -catggtg