1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catgttccatatttcatgaagacgtcgaacatgcatctacaaatacatttaaattgaatggacgctttaatcatgcaatccttttatccgtttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
species | Zea mays |
transcript | GRMZM5G814279_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAG GGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAAEST: gi|60341355|gb|DN208328.1|DN208328
genomic: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAGgtgagaaatg ... tttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
EST: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAG GGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAAEST: gi|91871951|gb|EB401908.1|EB401908
genomic: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAGgtgagaaatg ... tttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
EST: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAG GGCACACAGCTAGAAGATGGGAACAGGCGTCTAAAAGAACAAEST: gi|91871952|gb|EB401909.1|EB401909
genomic: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAGgtgagaaatg ... tttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
EST: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAG GGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAAEST: gi|71312209|gb|DR792627.1|DR792627
genomic: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAGgtgagaaatg ... tttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
EST: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAG GGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAAEST: gi|60355305|gb|DN222278.1|DN222278
genomic: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAGgtgagaaatg ... tttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
EST: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAG GGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
genomic: GACCAGCTATTCATGCAACAAATCGGCGAATTACTGCAAAAGgtgagaaatg ... tttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
catttaaattgaatggacgctttaatcatgcaatccttttatccgtttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
ctttaat putative branch site (score: 3)
tccttttatccgtttc putative PPT
aaattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttccatatttcatgaagacgtcgaacatgcatctacaaatacatttaaattgaatggacgctttaatcatgcaatccttttatccgtttcttgtagGGCACACAGCTAGAAGATGAGAACAGGCGTCTAAAAGAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
catgttc
- - - - - - - catgaag
- - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - ctacaaa
- - - - - - - - - - - - - - - - - - - - - -tacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca