1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAACTCCCTGATGAGATCTTAAGGCACAATGTGGATGAGAAGCGCCAGTTCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAGgtaaactagctgatggcttggtcagggctcctagtccccccccccccccccccaatcttatttgagtttgacctacttatgttgctactctcag
species | Zea mays |
transcript | GRMZM5G812144_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAG GCAGAGGGAGTATTAAATTCAAGATTACAACAAATAGTGCATACACTTGACEST: gi|76285995|gb|DV025563.1|DV025563
genomic: TCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAGgtaaactagc ... ctactctcagGCAGAGGGAGTATTAAATTCAAGATTACAACAAATAGTGCATACACTTGAC
EST: TCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAG GCAGAGGGAGTATTAAATTCAAGATTACAACAAATAGTGCATACACTTGACEST: gi|6851505|gb|AW352515.1|AW352515
genomic: TCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAGgtaaactagc ... ctactctcagGCAGAGGGAGTATTAAATTCAAGATTACAACAAATAGTGCATACACTTGAC
EST: TCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAG TCAGAGGGAGTATTAAATTCAAGATTACAGCAAATAGTGCATACACTTGAC
genomic: TCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAGgtaaactagc ... ctactctcagGCAGAGGGAGTATTAAATTCAAGATTACAACAAATAGTGCATACACTTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACTCCCTGATGAGATCTTAAGGCACAATGTGGATGAGAAGCGCCAGTTCCTTATAGAAATAAACATGGATTCTGAGAAGAATGATGCTGAGGTTCAGgtaaactagctgatggcttggtcagggctcctagtccccccccccccccccccaatcttatttgagtttgacctacttatgttgctactctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG